Last updated on 2025-07-27 08:48:39 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.1.5 | 13.80 | 125.07 | 138.87 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.1.5 | 10.47 | 87.87 | 98.34 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.1.5 | 215.67 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.1.5 | 215.81 | OK | |||
| r-devel-windows-x86_64 | 1.1.5 | 15.00 | 159.00 | 174.00 | OK | |
| r-patched-linux-x86_64 | 1.1.5 | 14.00 | 116.76 | 130.76 | OK | |
| r-release-linux-x86_64 | 1.1.5 | 12.41 | 116.48 | 128.89 | ERROR | |
| r-release-macos-arm64 | 1.1.5 | 106.00 | OK | |||
| r-release-macos-x86_64 | 1.1.5 | 177.00 | OK | |||
| r-release-windows-x86_64 | 1.1.5 | 16.00 | 124.00 | 140.00 | ERROR | |
| r-oldrel-macos-arm64 | 1.1.5 | 118.00 | OK | |||
| r-oldrel-macos-x86_64 | 1.1.5 | 130.00 | OK | |||
| r-oldrel-windows-x86_64 | 1.1.5 | 19.00 | 194.00 | 213.00 | OK |
Version: 1.1.5
Check: examples
Result: ERROR
Running examples in ‘refseqR-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: refseq_CDScoords
> ### Title: Extract the coding sequences (CDS) coordinates from a transcript
> ### accession
> ### Aliases: refseq_CDScoords
>
> ### ** Examples
>
> transcript = c("XM_004487701")
> refseq_CDScoords(transcript)
Error in refseq_CDScoords(transcript) :
Exactly one CDS per file is expected. Contact the maintainer
Execution halted
Flavors: r-devel-linux-x86_64-debian-gcc, r-release-linux-x86_64
Version: 1.1.5
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘refseqR.Rmd’ using rmarkdown
Quitting from refseqR.Rmd:109-111 [unnamed-chunk-10]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `refseq_CDScoords()`:
! Exactly one CDS per file is expected. Contact the maintainer
---
Backtrace:
▆
1. ├─base::substr(toString(refseq_CDSseq(transcript)), 1, 60)
2. ├─base::toString(refseq_CDSseq(transcript))
3. └─refseqR::refseq_CDSseq(transcript)
4. └─refseqR::refseq_CDScoords(transcript)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'refseqR.Rmd' failed with diagnostics:
Exactly one CDS per file is expected. Contact the maintainer
--- failed re-building ‘refseqR.Rmd’
SUMMARY: processing the following file failed:
‘refseqR.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-debian-gcc, r-release-linux-x86_64
Version: 1.1.5
Check: examples
Result: ERROR
Running examples in 'refseqR-Ex.R' failed
The error most likely occurred in:
> ### Name: refseq_CDScoords
> ### Title: Extract the coding sequences (CDS) coordinates from a transcript
> ### accession
> ### Aliases: refseq_CDScoords
>
> ### ** Examples
>
> transcript = c("XM_004487701")
> refseq_CDScoords(transcript)
Error in refseq_CDScoords(transcript) :
Exactly one CDS per file is expected. Contact the maintainer
Execution halted
Flavor: r-release-windows-x86_64
Version: 1.1.5
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building 'refseqR.Rmd' using rmarkdown
Quitting from refseqR.Rmd:109-111 [unnamed-chunk-10]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `refseq_CDScoords()`:
! Exactly one CDS per file is expected. Contact the maintainer
---
Backtrace:
▆
1. ├─base::substr(toString(refseq_CDSseq(transcript)), 1, 60)
2. ├─base::toString(refseq_CDSseq(transcript))
3. └─refseqR::refseq_CDSseq(transcript)
4. └─refseqR::refseq_CDScoords(transcript)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'refseqR.Rmd' failed with diagnostics:
Exactly one CDS per file is expected. Contact the maintainer
--- failed re-building 'refseqR.Rmd'
SUMMARY: processing the following file failed:
'refseqR.Rmd'
Error: Vignette re-building failed.
Execution halted
Flavor: r-release-windows-x86_64