Last updated on 2025-07-24 20:49:19 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0.8 | 10.76 | 310.45 | 321.21 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.0.8 | 9.65 | 175.01 | 184.66 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.0.8 | 334.61 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 1.0.8 | 433.40 | ERROR | |||
| r-devel-windows-x86_64 | 1.0.8 | 16.00 | 411.00 | 427.00 | OK | |
| r-patched-linux-x86_64 | 1.0.8 | 20.73 | 283.58 | 304.31 | OK | |
| r-release-linux-x86_64 | 1.0.8 | 12.21 | 286.37 | 298.58 | OK | |
| r-release-macos-arm64 | 1.0.8 | 142.00 | OK | |||
| r-release-macos-x86_64 | 1.0.8 | 313.00 | OK | |||
| r-release-windows-x86_64 | 1.0.8 | 15.00 | 417.00 | 432.00 | OK | |
| r-oldrel-macos-arm64 | 1.0.8 | 137.00 | OK | |||
| r-oldrel-macos-x86_64 | 1.0.8 | 265.00 | OK | |||
| r-oldrel-windows-x86_64 | 1.0.8 | 22.00 | 578.00 | 600.00 | OK |
Version: 1.0.8
Check: examples
Result: ERROR
Running examples in ‘broom-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: tidy.epi.2by2
> ### Title: Tidy a(n) epi.2by2 object
> ### Aliases: tidy.epi.2by2 epiR_tidiers
>
> ### ** Examples
>
> ## Don't show:
> if (rlang::is_installed("epiR")) (if (getRversion() >= "3.4") withAutoprint else force)({ # examplesIf
+ ## End(Don't show)
+
+ # load libraries for models and data
+ library(epiR)
+
+ # generate data
+ dat <- matrix(c(13, 2163, 5, 3349), nrow = 2, byrow = TRUE)
+
+ rownames(dat) <- c("DF+", "DF-")
+ colnames(dat) <- c("FUS+", "FUS-")
+
+ # fit model
+ fit <- epi.2by2(
+ dat = as.table(dat), method = "cross.sectional",
+ conf.level = 0.95, units = 100, outcome = "as.columns"
+ )
+
+ # summarize model fit with tidiers
+ tidy(fit, parameters = "moa")
+ tidy(fit, parameters = "stat")
+ ## Don't show:
+ }) # examplesIf
> library(epiR)
Loading required package: survival
Package epiR 2.0.85 is loaded
Type help(epi.about) for summary information
Type browseVignettes(package = 'epiR') to learn how to use epiR for applied epidemiological analyses
> dat <- matrix(c(13, 2163, 5, 3349), nrow = 2, byrow = TRUE)
> rownames(dat) <- c("DF+", "DF-")
> colnames(dat) <- c("FUS+", "FUS-")
> fit <- epi.2by2(dat = as.table(dat), method = "cross.sectional", conf.level = 0.95,
+ units = 100, outcome = "as.columns")
> tidy(fit, parameters = "moa")
Error in `dplyr::bind_rows()`:
! Can't combine `PR.strata.wald$test.statistic` <double> and `chi2.strata.fisher$test.statistic` <character>.
Backtrace:
▆
1. ├─(if (getRversion() >= "3.4") withAutoprint else force)(...)
2. │ └─base::source(...)
3. │ ├─base::withVisible(eval(ei, envir))
4. │ └─base::eval(ei, envir)
5. │ └─base::eval(ei, envir)
6. ├─generics::tidy(fit, parameters = "moa")
7. ├─broom:::tidy.epi.2by2(fit, parameters = "moa")
8. │ └─dplyr::bind_rows(massoc[names(massoc) != "chi2.correction"], .id = "term")
9. │ └─vctrs::vec_rbind(!!!dots, .names_to = .id, .error_call = current_env())
10. └─vctrs (local) `<fn>`()
11. └─vctrs::vec_default_ptype2(...)
12. ├─base::withRestarts(...)
13. │ └─base (local) withOneRestart(expr, restarts[[1L]])
14. │ └─base (local) doWithOneRestart(return(expr), restart)
15. └─vctrs::stop_incompatible_type(...)
16. └─vctrs:::stop_incompatible(...)
17. └─vctrs:::stop_vctrs(...)
18. └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = call)
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.0.8
Check: examples
Result: ERROR
Running examples in ‘broom-Ex.R’ failed
The error most likely occurred in:
> ### Name: tidy.epi.2by2
> ### Title: Tidy a(n) epi.2by2 object
> ### Aliases: tidy.epi.2by2 epiR_tidiers
>
> ### ** Examples
>
> ## Don't show:
> if (rlang::is_installed("epiR")) (if (getRversion() >= "3.4") withAutoprint else force)({ # examplesIf
+ ## End(Don't show)
+
+ # load libraries for models and data
+ library(epiR)
+
+ # generate data
+ dat <- matrix(c(13, 2163, 5, 3349), nrow = 2, byrow = TRUE)
+
+ rownames(dat) <- c("DF+", "DF-")
+ colnames(dat) <- c("FUS+", "FUS-")
+
+ # fit model
+ fit <- epi.2by2(
+ dat = as.table(dat), method = "cross.sectional",
+ conf.level = 0.95, units = 100, outcome = "as.columns"
+ )
+
+ # summarize model fit with tidiers
+ tidy(fit, parameters = "moa")
+ tidy(fit, parameters = "stat")
+ ## Don't show:
+ }) # examplesIf
> library(epiR)
Loading required package: survival
Package epiR 2.0.85 is loaded
Type help(epi.about) for summary information
Type browseVignettes(package = 'epiR') to learn how to use epiR for applied epidemiological analyses
> dat <- matrix(c(13, 2163, 5, 3349), nrow = 2, byrow = TRUE)
> rownames(dat) <- c("DF+", "DF-")
> colnames(dat) <- c("FUS+", "FUS-")
> fit <- epi.2by2(dat = as.table(dat), method = "cross.sectional", conf.level = 0.95,
+ units = 100, outcome = "as.columns")
> tidy(fit, parameters = "moa")
Error in `dplyr::bind_rows()`:
! Can't combine `PR.strata.wald$test.statistic` <double> and `chi2.strata.fisher$test.statistic` <character>.
Backtrace:
▆
1. ├─(if (getRversion() >= "3.4") withAutoprint else force)(...)
2. │ └─base::source(...)
3. │ ├─base::withVisible(eval(ei, envir))
4. │ └─base::eval(ei, envir)
5. │ └─base::eval(ei, envir)
6. ├─generics::tidy(fit, parameters = "moa")
7. ├─broom:::tidy.epi.2by2(fit, parameters = "moa")
8. │ └─dplyr::bind_rows(massoc[names(massoc) != "chi2.correction"], .id = "term")
9. │ └─vctrs::vec_rbind(!!!dots, .names_to = .id, .error_call = current_env())
10. └─vctrs (local) `<fn>`()
11. └─vctrs::vec_default_ptype2(...)
12. ├─base::withRestarts(...)
13. │ └─base (local) withOneRestart(expr, restarts[[1L]])
14. │ └─base (local) doWithOneRestart(return(expr), restart)
15. └─vctrs::stop_incompatible_type(...)
16. └─vctrs:::stop_incompatible(...)
17. └─vctrs:::stop_vctrs(...)
18. └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = call)
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc