add_metadata	add_metadata
af_distribution	af_distribution
arrange_data	arrange_data
dNdS_segment	dNdS_segment
example_filtered_SNV_df	example_filtered_SNV_df
filter_variants	filter_variants
merge_replicates	merge_replicates
plot_shannon	plot_shannon
position_allele_freq	position_allele_freq
prepare_annotations	prepare_annotations
read_reference_fasta_dna	read_reference_fasta_dna
shannon_entropy	shannon_entropy
shared_snv_plot	shared_snv_plot
shared_snv_table	shared_snv_table
snpeff_info	snpeff_info
snv_genome	snv_genome
snv_location	snv_location
snv_segment	snv_segment
tally_it	tally_it
tstv_plot	tstv_plot
tstv_ratio	tstv_ratio
