add_age_group_to_serosurvey
                        Adds age group marker to serosurvey
build_stan_data         Builds stan data for sampling depending on the
                        selected model
chagas2012              Chagas seroprevalence data in serofoi
chik2015                Chikungunya seroprevalence data in serofoi
extract_central_estimates
                        Extracts central estimates from stan_fit object
                        for specified parameter
fit_seromodel           Runs specified stan model for the
                        Force-of-Infection (FoI)
get_foi_index           Generates Force-of-Infection indexes for
                        heterogeneous age groups
plot_foi_estimates      Plots Force-of-Infection central estimates
plot_rhats              Plot r-hats convergence criteria for the
                        specified model
plot_seromodel          Visualise results of the provided model
plot_seroprev_estimates
                        Plot seroprevalence estimates on top of the
                        serosurvey
plot_serosurvey         Plots seroprevalence from the given serosurvey
plot_summary            Plots model summary
prepare_serosurvey_for_plot
                        Prepares serosurvey for plotting
prob_seroprev_age_by_age
                        Generate probabilities of seropositivity by age
                        based on an age-varying Force-of-Infection
                        (FoI) model.
prob_seroprev_age_time_by_age
                        Generate probabilities of seropositivity by age
                        based on an age-and-time varying
                        Force-of-Infection (FoI) model.
prob_seroprev_by_age    Generate probabilities of seropositivity by age
                        based on model choice.
prob_seroprev_gen_by_age
                        Generate probabilities of seropositivity by age
                        based on a general Force-of-Infection (FoI)
                        model.
prob_seroprev_time_by_age
                        Generate probabilities of seropositivity by age
                        based on a time-varying Force-of-Infection
                        (FoI) model.
probability_exact_age_varying
                        Computes the probability of being seropositive
                        when Forces-of-Infection (FoIs) vary by age
probability_exact_time_varying
                        Computes the probability of being seropositive
                        when Forces-of-Infection (FoIs) vary by time
serofoi-package         The 'serofoi' package.
set_foi_init            Sets initialization function for sampling
set_stan_data_defaults
                        Set stan data defaults for sampling
sf_cauchy               Sets Cauchy distribution parameters for
                        sampling
sf_none                 Sets empty prior distribution
sf_normal               Sets normal distribution parameters for
                        sampling
sf_uniform              Sets uniform distribution parameters for
                        sampling
simulate_serosurvey     Simulate serosurvey data based on various
                        Force-of-Infection (FoI) models.
simulate_serosurvey_age
                        Simulate serosurvey data based on an
                        age-varying Force-of-Infection (FoI) model.
simulate_serosurvey_age_time
                        Simulate serosurvey data based on an
                        age-and-time-varying Force-of-Infection (FoI)
                        model.
simulate_serosurvey_general
                        Simulate serosurvey data based on general
                        serocatalytic model.
simulate_serosurvey_time
                        Simulate serosurvey data based on a
                        time-varying Force-of-Infection (FoI) model.
summarise_central_estimate
                        Summarise central estimate
summarise_loo_estimate
                        Extract specified loo estimate
summarise_seromodel     Summarise specified model
veev2012                Venezuelan Equine Encephalitis Virus (VEEV)
                        seroprevalence data in serofoi
