HHsearch 1.5
NAME  136
FAM   
FILE  protein
COM   /nfs/amino-library/local/hhsuite/bin/hhmake -i protein.a3m 
DATE  Wed Mar 23 06:34:03 2016
LENG  87 match states, 87 columns in multiple alignment
FILT  91 out of 104 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
NEFF  5.5 
SEQ
>ss_pred PSIPRED predicted secondary structure
CCEEEEEECCCEEEEEEEECCCCCCEEEEEEEEEEECCCCCCEEEEEECCCCCCCCCCEEEEECHHHEEECCCCCEEEEEEEEEECC
>ss_conf PSIPRED confidence values
968999807727898888728898279999999999899767889998588998999867897748857757896988778888769
>Consensus
mxkIeIxxxxxxvxxRxgxxkxgxxxxixeQxAxvxlggxfpxxxxvxLexxqxpYpxGxYxlxxxSxxvxxxGxLxlxrxxlxxxx
>136
MIKVEIKPSQAQFTTRSGVSRQGKPYSLNEQLCYVDLGNEYPVLVKITLDEGQPAYAPGLYTVHLSSFKVGQFGSLMIDRLRLVPAK
>tr|V1DP21|V1DP21_9GAMM Helix-destabilising family protein OS=Shewanella decolorationis S12 GN=SHD_0613 PE=4 SV=1
MLKIEVFQEDVTVSARNMPPkDGKPGRTIYEQTAYAHLGGKFPVQMKLQVESPANVYPAGEYQIDSSSFVINNFGGLELKRFGLKIT-
>tr|N6YX41|N6YX41_9RHOO Helix-destabilising protein OS=Thauera linaloolentis 47Lol = DSM 12138 GN=C666_12665 PE=4 SV=1
SIKVEVSD--ETVHVKQGISGrTQKQYMIREQEAWGFFFSAdgrphpHPMRIRLSLEDDQAPYPKGTYVLSPESFYPDRWGQVSCR--------
>tr|D2TWW2|D2TWW2_9ENTR Putative uncharacterized protein OS=Arsenophonus nasoniae GN=ARN_05610 PE=4 SV=1
-LMVEIEESDVRVLEKEFFKKDENgnkkdeAIKRYYQIGLLHKGRQ-NIEISIPLKEGQLPYSAGQYLYHPNSFAVNKYGNLEIA--------
>tr|A0A0M0NJC5|A0A0M0NJC5_STEMA Single-stranded DNA-binding protein OS=Stenotrophomonas maltophilia GN=VL23_19380 PE=4 SV=1
SVKVTVLK--NEIDERGGSFKndAGEnvEYTTRKQKAKLETGG-FAYPFDVRLDKGQPGYPEGEYELDIESMLQVNKGVATLSKFtVLR---
>tr|A0A0P9RYF3|A0A0P9RYF3_9PSED Sensor histidine kinase OS=Pseudomonas syringae pv. helianthi GN=ALO68_200167 PE=4 SV=1
------------GISRSGIAkQSKNPYTMYQ--AFVHLPGIpYPQKVEFYAQQQSEVPQPGTYECDV----------------------
>tr|A0A0M1K7B2|A0A0M1K7B2_9XANT Uncharacterized protein OS=Xanthomonas oryzae GN=ADT27_19720 PE=4 SV=1
-MKITITS--QHVNEKHWE-KQGRSGIIRTQEAMAET-SKFRQTVRLDLGK-EPPYENGVYDYNLeDNVTVSRYGDFELPRK------
>tr|A0A099CX30|A0A099CX30_9GAMM Uncharacterized protein OS=Oleiagrimonas soli GN=LF63_0107935 PE=4 SV=1
--------------------WDGQTRDRVKQWCTIEIDGL-VTSFQHTVNP-GEELKPGSYRLSPASFSVQ-NGRLQMNRPVLEPMR
>tr|A0A068R2H4|A0A068R2H4_9ENTR Uncharacterized protein OS=Xenorhabdus poinarii GN=XPG1_1723 PE=4 SV=1
--YIEVTAADVKIEQKTRTNKnTGEITPYYTQRVIAHMGPRSMSETVITLSE-PNPLPEGKYLISGSSLYPGkPFGDnpprLEFNQ-------
>tr|A0A0M2KVV0|A0A0M2KVV0_STEMA Uncharacterized protein OS=Stenotrophomonas maltophilia GN=XY58_11730 PE=4 SV=1
APKITINS---NVETRTVTTKTGMQKPVYSQRATLETEA-MRIQIEVEVDGLDKGYPVGAVKEwDVtTDLVPGRFG-VELARR------
#
NULL   3706	5728	4211	4064	4839	3729	4763	4308	4069	3323	5509	4640	4464	4937	4285	4423	3815	3783	6325	4665	
HMM    A	C	D	E	F	G	H	I	K	L	M	N	P	Q	R	S	T	V	W	Y	
       M->M	M->I	M->D	I->M	I->I	D->M	D->D	Neff	Neff_I	Neff_D
       0	*	*	0	*	0	*	*	*	*	
M 1    3457	*	4105	*	*	4537	*	*	4706	4144	795	*	*	5417	*	3441	5586	*	*	*	1
       0	*	*	*	*	*	*	4976	0	0	

I 2    *	*	*	*	5938	*	5638	1696	*	1856	3537	5729	2989	*	*	3649	*	3880	*	*	2
       0	*	*	*	*	*	*	5176	0	0	

K 3    *	*	*	*	*	*	*	2731	801	5913	5406	4672	*	4357	4455	5780	4554	6128	*	5242	3
       0	*	*	*	*	*	*	5242	0	0	

V 4    5891	5143	*	*	*	*	*	940	*	*	5845	*	*	*	*	*	*	1265	*	*	4
       0	*	*	*	*	*	*	5340	0	0	

E 5    *	*	*	961	*	*	*	4981	*	5863	*	*	*	4246	3041	3897	2468	6004	*	*	5
       0	*	*	*	*	*	*	5340	0	0	

I 6    *	*	*	*	5669	*	*	1005	*	*	6288	*	*	*	*	*	*	1091	*	*	6
       0	*	*	*	*	*	*	5342	0	0	

K 7    *	*	*	2591	2344	*	6472	6433	2209	3362	4269	3971	*	6499	4439	5652	3487	5727	*	*	7
       43	*	5082	*	*	*	*	5378	0	0	

P 8    4449	*	2752	2966	*	6022	*	5620	3234	*	*	4638	3319	4702	*	1680	5125	5932	*	*	8
       1485	*	637	*	*	0	*	5346	0	1098	

S 9    3214	*	2885	1543	*	*	*	*	*	4842	*	*	4616	*	*	2227	*	3007	*	*	9
       0	*	*	*	*	*	0	3825	0	3565	

Q 10   *	*	1060	*	*	*	5214	*	*	*	*	2355	*	2972	*	3444	3666	*	*	*	10
       0	*	*	*	*	206	2912	3825	0	3565	

A 11   2778	*	4411	2938	*	4412	*	6324	5905	5054	*	5366	*	5279	*	2701	2591	2316	*	*	11
       0	*	*	*	*	0	*	5166	0	1336	

Q 12   3929	5885	4672	2496	5909	5706	4247	5877	3277	6256	*	4578	6035	3098	2927	4538	3432	4712	*	*	12
       25	*	5838	*	*	*	*	5378	0	0	

F 13   4052	5561	6249	*	5680	3691	*	2552	*	4994	*	*	6509	*	*	6543	4684	873	*	*	13
       0	*	*	*	*	*	0	5617	0	1025	

T 14   5296	*	2641	2626	6527	*	5206	3076	5352	4813	*	2832	*	5116	3823	4700	3490	3873	*	*	14
       40	5182	*	1000	1000	0	*	5617	1074	1025	

T 15   5701	*	*	1938	*	6204	6839	5912	6202	*	4325	3687	5853	4346	*	3866	1916	3060	*	5660	15
       0	*	*	*	*	*	*	5676	0	0	

R 16   *	*	*	*	4698	*	*	5155	2628	*	6460	6025	*	4427	546	*	*	6222	*	*	16
       0	*	*	*	*	*	*	5676	0	0	

S 17   *	*	*	3172	*	3697	4189	6095	6589	*	5289	4991	*	3445	3130	1990	2406	5128	*	*	17
       0	*	*	*	*	*	*	5676	0	0	

G 18   *	*	*	*	4294	1055	*	3311	*	4800	4750	5406	*	*	4638	5947	5920	2613	5824	5952	18
       0	*	*	*	*	*	*	5676	0	0	

V 19   *	*	*	4498	5402	*	*	3203	3812	*	*	2950	3143	6578	7077	4559	1706	2807	*	*	19
       77	*	4274	*	*	*	*	5676	0	0	

S 20   2386	*	*	*	3304	2809	*	6059	4509	*	*	5223	5620	*	6182	1769	2723	*	*	*	20
       604	1609	6143	0	*	0	*	5605	2616	1289	

R 21   4239	*	3039	4763	*	4478	*	*	1002	*	*	*	*	6690	3616	3359	6440	5545	5462	*	21
       490	1982	4849	479	1824	794	1241	5812	2266	1079	

Q 22   3603	*	2074	5165	*	3908	*	*	3135	*	6312	5154	*	4449	6185	2426	2430	*	*	*	22
       0	*	*	*	*	392	2073	5618	0	1192	

G 23   *	*	*	5481	*	604	*	*	2599	*	*	5328	*	4900	4837	*	4363	6292	*	*	23
       114	*	3717	*	*	*	0	5816	0	1000	

K 24   6193	*	5860	3752	*	3863	*	*	1417	6355	4716	3999	3169	4546	3607	5312	5019	4416	*	*	24
       319	2332	*	1586	584	0	*	5715	1960	1453	

P 25   2993	*	4485	4042	*	4810	*	5431	4380	*	*	5435	1320	3692	*	3591	4814	4557	*	*	25
       0	*	*	*	*	*	*	5822	0	0	

Y 26   *	*	*	*	4410	4909	*	5024	4399	5256	3902	*	*	4564	2537	6379	4544	5835	3763	1367	26
       0	*	*	*	*	*	*	5822	0	0	

S 27   4076	4985	3616	4328	6819	*	4516	3839	3719	*	6048	4706	4308	5072	6237	3980	1728	4125	*	6665	27
       0	*	*	*	*	*	*	5822	0	0	

L 28   *	*	*	*	2736	*	*	1300	5930	3609	2790	6493	*	*	4483	6613	3771	6343	*	4345	28
       0	*	*	*	*	*	*	5822	0	0	

N 29   5090	5295	*	6183	3395	*	4331	*	*	6026	*	3472	*	6340	1485	5821	*	5503	*	1879	29
       0	*	*	*	*	*	*	5709	0	0	

E 30   *	*	*	1064	4103	*	*	*	2591	*	*	4724	*	4922	*	2853	3877	*	*	5619	30
       148	*	3357	*	*	*	*	5709	0	0	

Q 31   *	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	31
       0	*	*	*	*	*	0	5537	0	1472	

L 32   *	*	4386	2576	*	6256	*	3901	2954	6425	5223	4744	*	6427	2575	5137	2877	3765	3850	6294	32
       0	*	*	*	*	0	*	5537	0	1472	

C 33   433	4235	*	*	*	3457	*	5934	*	*	*	*	*	*	*	6751	*	3481	*	*	33
       0	*	*	*	*	*	*	5728	0	0	

Y 34   4044	4994	*	6264	2909	5379	*	5536	4134	4854	5733	*	*	*	4724	6396	3408	5863	3738	1435	34
       0	*	*	*	*	*	*	5728	0	0	

V 35   2423	*	*	*	5176	5288	*	2722	*	1778	*	*	*	*	*	*	*	1657	*	*	35
       0	*	*	*	*	*	*	5728	0	0	

D 36   *	*	3511	2177	4248	*	1686	*	6129	4321	*	*	*	5981	*	5364	6429	4312	*	2632	36
       0	*	*	*	*	*	*	5728	0	0	

L 37   4550	5110	*	*	5208	*	*	4802	3934	1194	3857	4614	*	*	5149	4412	2963	4333	*	*	37
       27	*	5733	*	*	*	*	5728	0	0	

G 38   6172	*	3569	3083	4804	962	5165	*	*	*	*	5946	2540	*	*	*	*	*	*	5755	38
       18	6372	*	0	*	0	*	5683	1019	1048	

N 39   5475	*	2971	5386	*	848	5298	*	5213	5154	*	4163	5536	6796	4854	4137	6340	*	*	*	39
       269	*	2554	*	*	*	*	5728	0	0	

E 40   3860	5640	3121	6366	*	3573	5055	3707	2102	4020	*	*	*	3461	3163	4443	*	4821	*	6059	40
       832	1712	2909	1498	630	0	*	5548	2284	1862	

Y 41   *	*	*	*	1130	*	4085	*	*	*	3378	*	*	*	*	5213	*	*	*	1469	41
       0	*	*	*	*	0	*	5494	0	1704	

P 42   4338	*	*	3730	*	*	*	5981	5863	6129	5536	5624	773	*	3352	5335	5364	4210	*	*	42
       0	*	*	*	*	*	*	5728	0	0	

V 43   6081	*	4434	3563	*	*	6383	3858	5234	3387	5401	6262	*	2480	5364	4303	3201	2673	*	3399	43
       0	*	*	*	*	*	*	5728	0	0	

L 44   6340	*	*	2519	*	*	6429	*	2697	3584	5591	*	2532	3083	2909	4355	5028	4662	*	*	44
       0	*	*	*	*	*	*	5728	0	0	

V 45   6912	4901	*	*	1414	6630	*	2491	*	5543	3242	*	*	*	*	5934	3496	3157	*	4304	45
       0	*	*	*	*	*	*	5728	0	0	

K 46   *	*	2727	2566	*	*	*	6019	2129	*	6164	4034	*	4378	3210	3467	3906	4392	*	*	46
       0	*	*	*	*	*	*	5728	0	0	

I 47   5507	*	*	*	2901	*	5508	1946	*	2244	*	*	*	*	*	*	*	1619	*	5268	47
       0	*	*	*	*	*	*	5728	0	0	

T 48   5321	*	4797	4464	6349	4072	*	4123	4524	*	*	4376	3637	3081	2764	2964	3444	6264	*	3410	48
       0	*	*	*	*	*	*	5728	0	0	

L 49   3660	5288	*	*	*	*	4804	5585	*	584	*	6262	6055	*	*	6172	*	2945	*	*	49
       39	*	5217	*	*	*	*	5728	0	0	

D 50   4039	*	2127	1431	*	3666	*	5913	5480	*	*	5255	4779	3211	5801	4920	*	*	*	*	50
       20	*	6209	*	*	*	0	5820	0	1128	

E 51   6785	*	2011	2137	*	3360	*	*	2152	*	*	5782	5184	4807	*	4103	4227	*	*	*	51
       336	4289	2673	1907	447	*	0	5809	1213	1201	

G 52   6041	*	2243	5439	*	1281	*	*	5672	4093	*	3664	3529	3392	*	*	*	*	*	*	52
       0	*	*	*	*	89	4056	5391	0	2094	

Q 53   4007	*	3234	3568	*	4486	*	*	*	*	*	4121	4401	1118	4349	4301	5923	5582	*	*	53
       86	4107	*	2000	415	0	*	5716	1231	1006	

P 54   3230	*	6000	2973	*	5385	*	5073	3566	3453	*	4005	1927	3603	*	3954	6129	4849	*	*	54
       0	*	*	*	*	*	*	5728	0	0	

A 55   2523	5564	*	5508	4765	3252	*	6504	*	5646	6264	*	1107	*	*	*	6839	3129	*	6652	55
       0	*	*	*	*	*	*	5728	0	0	

Y 56   *	*	*	*	5417	*	6163	6349	*	2919	*	*	3876	*	*	*	*	*	5100	472	56
       0	*	*	*	*	*	*	5728	0	0	

A 57   2697	*	6589	4454	6396	5448	*	6505	3915	6516	*	*	1096	3337	6264	4291	7097	5130	*	*	57
       0	*	*	*	*	*	*	5728	0	0	

P 58   1544	*	*	4075	*	*	*	6196	6101	6576	*	5733	1848	*	5585	5791	4323	2527	*	*	58
       0	*	*	*	*	*	*	5728	0	0	

G 59   *	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	59
       0	*	*	*	*	*	*	5728	0	0	

L 60   3947	*	3091	2659	3820	*	6504	3916	3203	3476	5585	5605	5217	5624	4569	4461	3216	5094	*	*	60
       0	*	*	*	*	*	*	5728	0	0	

Y 61   5217	*	*	*	*	*	5585	5863	*	*	*	*	*	*	*	*	*	4100	*	190	61
       0	*	*	*	*	*	*	5728	0	0	

T 62   6383	*	3637	2356	*	*	*	6550	3727	3036	*	*	*	4528	4503	5779	1681	3970	*	5448	62
       0	*	*	*	*	*	*	5728	0	0	

V 63   *	3660	*	4464	5068	*	*	2551	*	1341	5224	*	4542	*	*	*	*	2695	*	4152	63
       113	3727	*	0	*	*	*	5728	1336	0	

H 64   3040	6639	1389	*	*	6429	1943	*	6389	5578	*	5733	5200	*	*	3036	6164	*	*	*	64
       18	*	6349	*	*	*	*	5728	0	0	

L 65   6756	*	6004	4817	*	4552	*	4313	*	3690	6568	*	1177	6497	6253	3221	6263	2629	*	6615	65
       179	3097	*	0	*	*	0	5716	1541	1006	

S 66   3659	*	3286	2800	*	4548	*	5838	4036	*	*	4307	5124	5254	4527	1499	4296	*	*	*	66
       0	*	*	*	*	*	0	5577	0	1006	

S 67   3518	*	3689	*	*	5643	*	*	5145	*	*	5569	5838	*	*	443	*	6282	*	*	67
       25	*	5838	*	*	0	*	5577	0	1006	

F 68   *	*	*	*	1509	*	*	3244	*	2190	3120	*	*	*	*	*	*	4884	*	2514	68
       0	*	*	*	*	*	0	5552	0	1005	

K 69   3855	*	*	3726	6800	3321	*	5191	4035	3759	*	*	*	5554	4714	4952	3025	2459	4624	2765	69
       0	*	*	*	*	0	*	5552	0	1005	

V 70   5416	*	5843	*	*	6167	*	2819	*	5400	*	5673	3227	3627	*	6478	3590	1064	*	*	70
       0	*	*	*	*	*	*	5669	0	0	

G 71   *	*	3007	*	*	1393	*	6167	*	*	6272	2155	*	5561	*	3426	5471	3231	*	*	71
       174	3893	4435	0	*	*	*	5669	1304	0	

Q 72   6172	*	2525	3611	*	5124	6267	*	3671	*	5955	2055	5443	3243	2230	6394	*	*	*	*	72
       0	*	*	*	*	0	*	5475	0	1290	

F 73   *	*	5843	*	1369	*	*	*	3279	*	*	3459	*	*	5966	5945	6461	*	4611	1657	73
       0	*	*	*	*	*	*	5669	0	0	

G 74   6556	*	6449	6327	6180	245	*	*	5344	*	*	4583	*	5141	*	6221	*	*	*	*	74
       117	*	3680	*	*	*	*	5669	0	0	

S 75   3708	*	2312	*	*	3219	*	*	3858	*	*	2684	*	4090	2740	3223	6211	4032	*	*	75
       36	5347	*	2000	415	0	*	5383	1057	1336	

L 76   5505	*	*	*	5554	*	4941	4209	*	420	*	*	5225	*	*	*	*	3385	*	*	76
       0	*	*	*	*	*	*	5571	0	0	

M 77   3276	*	5528	1353	5797	5857	*	6175	4860	6524	4677	4720	*	3794	4010	3651	4459	4238	*	*	77
       0	*	*	*	*	*	*	5571	0	0	

I 78   *	5677	*	*	2306	*	*	2337	*	1204	4909	*	*	*	*	*	*	3145	*	*	78
       0	*	*	*	*	*	*	5571	0	0	

D 79   3043	*	5194	6370	*	2485	*	*	2315	*	*	3255	5541	4993	3307	2429	6031	*	*	*	79
       0	*	*	*	*	*	*	5557	0	0	

R 80   *	*	4762	*	*	5378	*	*	2146	*	*	*	*	4993	586	5994	*	*	*	*	80
       0	*	*	*	*	*	*	5159	0	0	

L 81   *	*	*	5373	2176	*	*	2859	4015	3957	*	4781	5094	*	2349	*	5784	4325	*	2639	81
       565	1626	*	119	3661	*	*	5075	2029	0	

R 82   3507	*	4673	4383	5461	2355	*	4125	2199	4802	5216	*	*	5316	4253	4790	*	2688	*	*	82
       0	*	*	*	*	*	*	4750	0	0	

L 83   *	*	*	*	5001	*	*	3985	4850	494	3364	*	*	5470	*	*	*	4608	*	*	83
       0	*	*	*	*	*	*	4750	0	0	

V 84   *	*	*	3780	*	5639	*	2246	2761	2460	5597	*	*	*	4045	*	4282	2219	5679	*	84
       158	*	3267	*	*	*	*	4750	0	0	

P 85   *	*	*	*	*	*	*	2263	*	3191	*	*	867	*	4891	3778	5196	*	*	*	85
       0	*	*	*	*	0	*	4401	0	1224	

A 86   3360	*	*	2897	*	*	*	3866	*	2265	4081	*	4455	*	*	4814	3131	2075	*	*	86
       0	*	*	*	*	*	*	3924	0	0	

K 87   2394	*	*	*	*	*	*	*	850	*	*	*	*	*	1972	*	*	*	*	*	87
       0	*	*	0	*	*	*	2053	0	0	

//
