clipp-package           clipp: Calculate Likelihoods by Pedigree Paring
combine_loci            Combine the genotype frequencies and transition
                        matrices of two genetic loci
dat_large               Simulated data on one family with approximately
                        10,000 members
dat_small               Simulated data on 10 families with
                        approximately 100 members each
geno_freq_monogenic     Calculate genotype frequencies from allele
                        frequencies using Hardy-Weinberg equilibrium
geno_freq_phased        Calculate phased genotype frequencies from
                        allele frequencies, assuming Hardy-Weinberg
                        equilibrium
geno_freq_polygenic     Genotype frequencies for the hypergeometric
                        polygenic model
genotype_probabilities
                        Calculate genotype probabilities for a target
                        person
pedigree_loglikelihood
                        Calculate the log-likelihoods of pedigrees
penet_large             A penetrance matrix relating the phenotypes in
                        'dat_large' to three genotypes
penet_small             A penetrance matrix relating the phenotypes of
                        'dat_small' to three genotypes
trans_monogenic         The transmission matrix for a single genetic
                        locus
trans_phased            The transmission matrix for phased genotypes
trans_polygenic         The transmission matrix for the hypergeometric
                        polygenic model
