assign.clusters         Cluster Assignment
cluster.bic             HMM BIC
count.parameters        Count HMM Parameters
emission.heatmap        Heatmap Emission Probabilities
hmm.clust               DBHC Algorithm
model.ll                Get HMM Log Likelihood
partition.bic           Partition BIC
select.seeds            Seed Selection Procedure
seq2hmm.ll              Sequence-to-HMM Likelihood
size.search             Size Search Algorithm
smooth.hmm              Smooth HMM Parameters
smooth.probabilities    Smooth Probabilities
transition.heatmap      Heatmap Transition Probabilities
